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Plants have a lot to tell us about the past …

Jeff Benca is a welcome addition to the Department of Integrative Biology and UCMP’s highly active paleobotany group as a member of Cindy Looy’s lab.  However, Jeff also spends a lot of his time “up the hill” at the UC Botanical Garden, where he has been given space for his astonishing collection of lycopods that he brought with him from his days at the University of Washington. This ancient vascular plant group (along with rare carnivorous plants and orchids) actually caught his interest while he was still a high school student in Seattle, but since those days, he has not only found ways to cultivate the plants, but is conducting research on both modern and extinct members of the lineage. Jeff hopes to discover how members of the lycopod group survived and thrived through the End-Permian extinction, 252 million years ago.

Both his research focus and unabashed enthusiasm caught the attention of National Geographic’s Explorers Journal and UC Berkeley’s News Center.

Cataloging the archives: Chaney, the Emperor and Metasequoia

Another in a series of blog posts relating to the museum's "cataloging the archives" project

The UCMP archives contain five large scrapbooks containing museum-related newspaper clippings dating from 1948 to 1989. The earliest clippings in the oldest scrapbook concern UCMP paleobotanist Ralph Chaney's 1948 trip to central China to see for himself, Metasequoia, a tree thought to have been extinct since the Miocene. The existence of this living fossil had just been publicized in a paper by Hu and Cheng1. The San Francisco Chronicle made a big deal about Chaney's trip, sending one of their own writers along, who filed a series of reports.

Chaney and Metasequoia

Left: Metasequoia is a deciduous conifer and was leafless when Chaney first saw it in March of 1948. See an enlargement. Middle: Chaney photographing the tree pictured at left in 1948. See an enlargement. Right: Chaney took this photo on a later visit when the tree was in leaf. See an enlargement. All three of these images are from Chaney's lantern slide collection.

But it was a later clipping from the October 20, 1953 Daily Californian that caught my attention. It concerned an interesting relationship between Chaney and Emperor Hirohito of Japan. Here's an excerpt:

"Chaney, on a routine trip to Tokyo and the Far East in 1949, personally presented the Emperor with five Dawn Redwood [Metasequoia] trees, which were planted on the grounds of his estate in Tokyo.

"Chaney had known the Emperor from past visits to Japan, and said yesterday he was inspired to make the gift when he heard that Hirohito was very interested in the tree.

"In 1949, when Chaney was in China, he procured five seedlings of the recently discovered tree and delivered them to the Emperor.

"Chaney received occasional news of the progress of the trees, and made a point of stopping to see them whenever he was in Japan. When Crown Prince Akihito visited the campus recently, he presented the professor with a progress report of the trees sent from Hirohito."

Then, while looking at digital photos of Chaney's lantern slide collection — volunteer photographer Dave Strauss has photographed Chaney's entire collection of lantern slides and glass negatives for the museum — I noticed one of a Japanese gentleman standing next to what looked like a Metasequoia sapling. Hmmm …. So I went online and studied a number of photographs of Hirohito. I am now convinced that the image is of the Emperor himself with one of Chaney's saplings!

Hirohito article and lantern slide

Left: The article from The Daily Californian describing Chaney's gift to Emperor Hirohito. See an enlargement. Right: Emperor Hirohito with one of Chaney's Metasequoia seedlings. See an enlargement.

And then a clipping from the May 6, 1969, University of California Clip Sheet provided this progress report: "By now, the Japanese have planted 100,000 dawn redwoods, all descended from Chaney's seedlings."

You never know what cool story you're going to find in the archives!

See other blog posts in this series:

   • Cataloging the archives: Geology camp 100 years ago

   • Cataloging the archives: Unearthing a type

   • The Amber Files: Words from the University Explorer

   • The Amber Files

See newsletter articles about the archive cataloging project:

   • The Mellon Foundation CLIR grant

   • Cataloging the archives: Update I

   • Saluting our volunteers [primarily about our volunteers working on the cataloging project]

Or search UCMP's archival collections yourself!
 

1Hu, H.H., and W.C. Cheng. 1948. On the new family Metasequoiaceae and on Metasequoia glyptostroboides, a living species of the genus Metasequoia found in Szechuan and Hupeh. Bulletin of the Fan Memorial Institute of Biology New Series 1(2):153-161.

Archosaurs: A new online exhibit

UCMP is proud to announce the completion of its web exhibit on archosaurs — I guess you could call it a Diapsida exhibit but we've chosen to focus on the archosaur lineage.

Matt examines the skull of Tomistoma

Matt Wedel examines the skull of Tomistoma, the False Gharial. Photo by Vanessa Graff.

It's roots go back to the end of the spring semester, 2006. Former UCMP grad student John Hutchinson (Ph.D., 2001, now a Professor of Evolutionary Biomechanics at the University of London's Royal Veterinary College) had updated a number of the museum's web pages on dinosaurs, and he was asked whom he'd recommend for writing new material on the archosaur lineage. John suggested that we approach grad student Matt Wedel in the Padian Lab, and that summer the research, reading, and writing began.

Matt sent the bulk of the content for the archosaurs exhibit to me in May of 2007, but that was also the year Matt earned his Ph.D. and got a new job. Between the job and family, it was tough finding time to work on the final bits of archosaurs.

Meanwhile, I tracked down images, formatted the text that I had for the web, and continued to check in with Matt periodically. In May of 2010 Matt sent me the final pieces of archosaurs, the most important being his text on modern crocodilians. For the next several months, I worked with Matt to resolve some issues surrounding the archosaur phylogeny and I continued to hunt down images. By November, the exhibit was finally ready … except navigating among the numerous pages within the exhibit was quite difficult, so we decided to postpone its launch until UCMP Webmaster, Josh Frankel, could implement a solution. With the navigation issue resolved, archosaurs is now up and ready for the public. It only took us about six years!

The museum appreciates not only Matt's expertise, but his dedication — he was determined to complete the archosaurs exhibit no matter how long it took. And now it's finally “done” … although as Matt will be the first to tell you, the perceived relationships between organisms — particularly extinct ones — are always in a state of flux (due to new evidence and interpretations). So maybe Matt isn't completely done with archosaurs after all ….

Matt Wedel is currently Assistant Professor of Anatomy at the Western University of Health Sciences in Pomona, California.

A collaborative grant to examine what triggers megafauna extinction

Tony Barnosky has received an NSF grant that will support a highly collaborative research program to test the synergistic effects of climate change and human population growth in magnifying extinction intensity.  South America offers a natural site to test these effects.  Barnosky and graduate students Emily Lindsey and Natalia Villavicencio hypothesize that if human impacts were significant in causing extinctions, then the last records for taxa should be found only after humans arrived on the continent, and that the geographic pattern of extinction should follow the sequence of human colonization and population increase in different regions. If climate alone drove extinction, taxa should disappear during the most pronounced climate changes, but not necessarily coincident with first human appearance and population increase. If synergy intensifies extinction, then extinction should accelerate dramatically when increased human population pressures and rapid climate change coincide.

The data from South America will provide an ideal way to examine the role of synergy in triggering extinction. For that reason, the project team proposes to:

  • Provide radiocarbon dates needed to determine the chronology of extinction for a broad spectrum of South American megafauna
  • Contribute to the international cooperation needed to analyze the extinction chronology
  • Provide a web-accessible database of the Quaternary fauna of South America, similar to NEOMAP and NEOTOMA
  • Use the information to better characterize the extent to which the looming threats of rapid climate change and growing human population can intensify extinction potentials
  • Develop effective outreach programs and scientific strategies to help minimize future extinctions.

Barnosky on Earth's tipping points in Nature

Twenty-two scientists including lead author Tony Barnosky urge us to understand the danger of global environmental tipping points in their review paper in the June 7 issue of Nature. They examine data from past global environmental changes, compare it to how humans are changing the planet today, and discuss what that could mean for our future. They conclude that if we continue at our current rates of environmental destruction and resource use there will be dramatic impacts on the quality of life for coming generations.

For more information on the paper, including a video interview with Barnosky and a summary of how this research ties to The Berkeley Initiative in Global Change Biology, read the full press release at the UC Berkeley News Center.

Accolades continue for UCMP websites

The UCMP websites continue to rack up recognition and serve users around the world. Here's a taste of the latest website news:

  • Understanding Evolution has been recognized as a key teaching resource in a recent NAS publication, Thinking Evolutionarily: Evolution Education Across the Life Sciences: Summary of a Convocation that was organized by a committee under the aegis of the Board on Life Sciences of the National Research Council (NRC) and the National Academy of Sciences (NAS) and held on October 25-26, 2011.
  • Understanding Evolution also received recognition as “Best of the Web” by the Genetic Engineering & Biotechnology News!  Read more here.
  • Understanding Science continues to gain popularity and now has international recognition with translations underway in Polish by the Center for Citizenship Education in Warsaw and in Swedish by the Center for Biosciences and Nutrition in Stockholm.
  • Of particular interest is the Arusha project spearheaded by UCMP Faculty Curator, Leslea Hlusko, in which 37 teachers in 18 schools participated in workshops  to talk through the scientific process, how they teach it in their classrooms, and also to translate the Understanding Science flowchart into Kiswahili.  Their goal is to make this Kiswahili version of the Understanding Science flowchart available to all schools in East Africa that may be interested in it.

The Arusha Project



The Understanding Science flowchart in Kiswahili

Lessons for today in ancient mass extinctions

This month's Evo in the News on Understanding Evolution looks at the work of incoming UCMP faculty curator Seth Finnegan. Seth is the lead author on a paper published in Proceedings of the National Academy of Sciences showing that the end of the Ordovician marked a true mass extinction caused by habitat loss due to falling sea levels and cooling of the tropical oceans. The Evo in the News feature explains and discusses the significance of this research, and includes additional links, resources, and questions for use in classrooms.

Read Evo in the News: Lessons for today in ancient mass extinctions.

Dispatches from Clear Lake, part 1

UCMP's Cindy Looy is leading a project to collect 130,000 years worth of sediment data from Clear Lake in order to better understand how life has adapted to climate change. Along the way, members of her team will report back to us with all the progress and drama from the field. Here's our first set of dispatches.

 

Assembling the barge

From Ivo Duijnstee:

Thu, April 26

First mud
It has begun. Except for some minor delays, the Clear Lake drilling expedition had a relatively smooth start. When our seven-headed UC Berkeley team arrived on site in Lakeport California, six members of the not-for-profit drilling company DOSECC had already assembled the large drilling barge to the point that it was almost good to go. Not much later, three sediment core curators of the National Lacustrine Core Facility (LacCore) arrived; completing the drill team in charge of the first days of this enterprise.

Fri, April 27

Today, a boat pushed the barge to its first drilling position in the southeastern part of the northern branch of the lake. This is in a part of the lake with a thick continuous sediment package. The deeper layers date back at least to the warm part of the previous interglacial (~130,000 years ago), a period we are very much interested in, as it may provide an analog for the current climate change in California.

Sat, April 28

From our Rocky Point base camp on the other side of the water, we can barely make out the barge’s position, as the sizeable drilling barge is reduced to a mere speck on the horizon. The inconspicuousness changes dramatically when night falls and the needle in the haystack turns into a beacon of light, as soon as the flood lights on the barge are switched on.

Tonight, the night crew (on the barge everyone works in two 12-hour shifts) made their way to the barge in the former county fire boat. This boat was made available for the crews’ semidiurnal commute by our collaborators of the Lake County Water Resources Department. Around 11PM, word reached base camp that the DOSECC drillers hoisted the first sediment core up on deck.

The barge has been moved out to the drill site.

Sun, April 29

This morning the night crew brought the uppermost 28 meter (93 ft) of sediment cores ashore, so the Holocene is taken care of. Let’s dig deeper into the Pleistocene!

Cindy Looy with the first core sample.

We have some cores!

So far, things are going smoothly on the drill platform. The day crew is off to their 12 hour shift, and the night crew is heading to bed. At the house in Rocky Point — our base camp — we are starting our pile of sediment-filled transparent tubes in the garage.

Mon, April 30

It’s media day!

Almost all day, camera crews, radio journalists, newspaper photographers and reporters were buzzing around, interviewing UCB/UCMP’s Cindy Looy and Liam Reidy, DOSECC Director of Operations Chris Delahunty and LacCore scientist Ryan O’Grady as they made visits to our floating drill site. We’ve had so much attention already, and the UCB press release is yet to come!

Chris Delahunty being interviewed for KQED radio.

The timing of the media is perfect: just like the weather, everyone in the team is in a sunny mood since the team has reached a greater depth than the USGS did at the same location during its 1973 Clear Lake drilling program. That means that the teams first target (115 m, or 377 ft) has been reached, and there is more to come.

Gravel.

At about 140 m (460 ft) into the sediment, it’s over with the monotonously greenish grey playdough that has filled the plastic core linings so far. In the dark, the night crew has struck gravel, making it impossible to get anything out of the lake bed. Fortunately, the drillers have some tricks up their coverall sleeves. For now they are mixing a special kind of mud that the day shift will use to get through the gravel layer. They will pump the muddy mixture into the borehole so that the gaps between the chunks of gravel will be filled with sticky goo; enabling the drillers to get the loose gravel out.

Tue, May 1

Alas, despite the fact the DOSECC team successfully crossed the gravel layer, things are not going well. Beyond the gravel layer there is sand and more gravel. Now things are going this slow, we decide that it is better to stop drilling at this site, and get started on a second hole nearby. As the two drillers prepare the drilling equipment for the move to the next hole, the scientific part of the night shift gets to spend an unexpected night in the house, where it is warm and couches are comfy... perhaps a bit to comfy when you are trying to stick to the nocturnal routine of the graveyard shift...

 

Renske with an armload of cores.

From Renske Kirchholtes:

Wed, May 2

*S*  hifts are 12 hours long and days start incredibly early

*C*  ores are covered in mud and so are we

*I*  ncessant noise of the generators, shrouding the barge in heavy diesel fumes

*E*  very day starts at 5.45am

*N*  o matter what happens, the entire crew is always in great spirits

*C*  lear Lake is a neat location and the weather is close to perfect

*E*  asily one of the coolest projects I have ever been part of!


See more text, audio, and video coverage of the Clear Lake drilling project here.

A special night at UCMP

Cal Day is the one day of the year when lucky members of the public can tour UCMP's collection. But this year, on the night before Cal Day, UCMP hosted a special event to take some of our closest friends behind the scenes.

Excitement is in the air. Also, a T. rex tail!

 

This invitation-only event included sneak previews of Cal Day exhibits, tours of the collection, the paleo art of William Gordan Huff, and fossils recovered during the construction of the Caldecott Tunnel's fourth bore.

UCMP-affiliated faculty curators, scientists, students, and educators were on hand to present a night that our guests won't soon forget. After some mingling and introductory remarks from Director Charles Marshall our visitors were whisked into the collection to enjoy a glimpse of the exciting work happening at UCMP.

 

Charles in action.

 

Ken Finger serves up some local fossils, fresh from the Caldecott Tunnel site.

 

Renske Kirchholtes and Robert Stevenson explain the story of Metasequioa to our guests.

 

Theresa Grieco showed off monkey fossils and talked about her upcoming trip to Olduvai Gorge (photo by Silvia Spiva).

 

Pat Holroyd revealed some of the hidden treasures of UCMP being uncovered thanks to our latest archiving grant.

 

Dave Lindberg neatly demonstrated how our vast collection provides an essential historic baseline for the natural history of California.

 

Anna Thanukos took visitors beyond the collection through the museum's many education and outreach projects.

 

Ash Poust dazzled onlookers with phytosaurs, pareiasaurs, and other impressive fossils from our broad collection.

 

Brian Swartz led the group from the sea to dry land with close-up looks at some of our fishy ancestors.

 

Diane Erwin pieced together a climate change puzzle using UCMP's California plant fossils.

 

This exciting, unique UCMP experience produced many smiles and set the tone for the Cal Day to come.

For more photos from the evening see this album on Facebook.

Find out how to become a Friend of UCMP.

Cataloging the archives: Geology camp 100 years ago

Looking at UCMP's modern offices and collections space, one might not appreciate that the paleontology tradition at Berkeley stretches back more than one hundred years.  But now the CLIR/UCMP Archive Project is bringing this history to light. Some of the oldest supplemental locality files I have come across this semester contain class reports and geologic maps prepared by a Cal field geology class in the summer of 1911. Led by Bruce L. Clark, who eventually became the first director of the UCMP, the class camped on the south slope of Mount Diablo in and around what is today Mount Diablo State Park. The scientific goal of the one-month course was to reconstruct the tectonic history of the area through mapping of exposed rock units and collecting of marine invertebrate fossils that are indicative of geologic ages and past environments.

Here are some of the photographs from student Irving V. Augur's report along with the original typewritten captions:

Also in the archive are students' field notes and maps, such as the ones below by William S. W. Kew. In his notes, he recorded the orientation of rock layers (e.g., strike of N60°W and dip of 60°S for Locality 27) and scientific names of fossil invertebrates that had been collected at various locations on the mountain (e.g., Dosinia whitneyi is a clam).

[Fossils from Mount Diablo: top, a Cretaceous clam, specimen number 199004; middle, an internal mold of an Eocene heart urchin, Schizaster lecontei, specimen number 199000; bottom left, Miocene sand dollar, Astrodapsis sp., specimen number 199001; bottom right, a Miocene scallop, specimen number 199002.]

And yes, the fossil clam, sand dollars and scallop pictured above are the specimens collected by the students of the field course 100 years ago. Some of the fossils brought back are currently stored in the Campanile on the Berkeley campus, while others have found their home in the UCMP's research collections in the Valley Life Sciences Building.

After a month of surveying, the students examined these data to figure out the ages of rock layers as well as the arrangement of rocks beneath the surface of the mountain. Here is an exquisitely drawn diagram by Auger.

So what makes Mount Diablo geologically interesting? If you look closely at Kew's map with color-coded rock formations, you will notice that, as one climbs up the mountain, the underlying rock layer becomes progressively older from the Miocene (faint purple and yellow) to Eocene (red), Cretaceous, and Jurassic (green and orange)—which is a bit counterintuitive, isn't it? Furthermore, Auger's inferred cross-section through the mountain suggests that the strata are almost vertically oriented.

In his class report, I. V. Augur wrote:

"The general structure of Mt. Diablo region was for some time a point of disagreement, the reason being that while on the north side evidence of the strata dipping away from the mountain suggested an anticline, evidence on the opposite side did not bear out the assumption, since the general dip was in the same direction and the succession of beds reversed. Prof. J. C. Merriam, however, after a careful study of the structure and faunal relations, pronounced it an overturned anticline, which structure has been generally accepted by geologists who have examined the territory under discussion" (Augur 1911, p. 2).

After a century of additional research, the interpretation of the mountain's geology has changed. Experts today think that Mount Diablo is largely a product of a series of thrust faults (follow this link to see a simplified animation). Specifically, the Jurassic-Cretaceous rocks (which now form the upper portion of the mountain) have been uplifted along the fault zone in the last few million years, bending the more recent Eocene to Miocene rock layers on the southwest side of this zone (the lower portion of the mountain that was mapped by Kew and his classmates).

So the old class reports are uniquely valuable for giving us glimpses into the development of scientific ideas through the eyes of students. The detailed observations recorded in the class reports reveal that the field camp was really a group research project involving students.

An excerpt from I. V. Augur's report

A table of fossils colleted (from W. S. W. Kew's report)

An excerpt from Kew's report with comments (in blue) by the instructor (Clark?)

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

As one flips through these reports, it is worth keeping in mind that, in 1911, the theory of continental drift was still being formulated by Alfred Wegener. More locally, this is back when John C. Merriam and colleagues from Berkeley had been tirelessly digging up asphalt-covered fossils from the tar pits of Rancho La Brea in Los Angeles, and an undergraduate student by the name of Charles L. Camp was busy catching reptiles and amphibians (such as this arboreal salamander) for the newly-founded Museum of Vertebrate Zoology.

After 1911, Clark continued to teach and conduct research in the Mount Diablo area for many more years. This not only contributed to greater understanding of regional geology but also led to a fortuitous discovery in 1927 of one of the most significant Miocene mammal localities in California, the Black Hawk Ranch Quarry. Also notably, some of the students from the field camp went on to become respected geologists—Kew, for instance, pursued his doctoral degree in the Department of Paleontology and produced important works on fossil echinoderms (sea urchins, sand dollars, and their relatives).

To learn more about the geology of Mount Diablo, check out Doris Sloan's Geology of the San Francisco Bay Region (University of California Press) and take a hike on the interpretive Trail Through Time on a sunny day. I end with a few images from my recent excursion to the mountain with my colleagues. Considering the extent of Clark's and his students' survey effort, we may have crossed their footsteps at some point as we climbed Eocene marine sandstones (below left), traversed meadows dotted with California Poppies (below center), and stood by outcrops of ancient radiolarian chert (below right).

Special thanks to Dave Strauss for photographing Kew's map, David K. Smith for information on the geologic history of Mount Diablo, and Renske Kirchholtes and Emily Lindsey for the trip to Mount Diablo State Park!

 

More stories from the CLIR/UCMP Archive Project

Cataloging the archives: Update I

Cataloging the archives: Unearthing a type